Transcript: RHPN1-AS1:1

Basic information

LNCipedia transcript ID: RHPN1-AS1:1 
LNCipedia gene ID: RHPN1-AS1
Location (hg19): chr8:144448279-144450962
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2684 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA43:1
Alternative gene names: MGC3113


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.9867 non-coding 
CPAT coding probability 85.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RHPN1-AS1:1 no no no no

Available literature

  1. Lu (2017), The Long Non-Coding RNA RHPN1-AS1 Promotes Uveal Melanoma Progression., Int J Mol Sci
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 RHPN1-AS1:1
4.1 RHPN1-AS1:1
5.0 RHPN1-AS1:1
5.1 RHPN1-AS1:1
5.2 RHPN1-AS1:1