Transcript: RNASEH1-AS1:13

Basic information

LNCipedia transcript ID: RNASEH1-AS1:13 
LNCipedia gene ID: RNASEH1-AS1
Location (hg19): chr2:3606082-3609324
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1207 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000438436; ENST00000438436.1; AC108488.3-001; OTTHUMT00000322557.1
Alternative gene names: ENSG00000234171; AC108488.3; ENSG00000234171.1; OTTHUMG00000151419.1; RNASEH1-AS1; ; LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 7.93% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.37037037
seqAAMRIYSKGCGQMNECTFFSGQKDVRIHELE
orfFrame7.180798429

In stringent set: no

Locus conservation

Locus conservation?
RNASEH1-AS1:13 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS7-1:7
3.1 lnc-RPS7-1:8
4.0 RNASEH1-AS1:13
4.1 RNASEH1-AS1:13
5.0 RNASEH1-AS1:13
5.1 RNASEH1-AS1:13
5.2 RNASEH1-AS1:13