Transcript: RNASEH1-AS1:15

Basic information

LNCipedia transcript ID: RNASEH1-AS1:15 
HGNC Gene Symbol: RNASEH1-AS1    
HGNC Full Gene Name: RNASEH1 antisense RNA 1
Ensembl Gene ID: ENSG00000234171
Ensembl Transcript ID: ENST00000438436
Location (hg19): chr2:3606082-3609335
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1218 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438436.2
Alternative gene names: ENSG00000234171.2; RNASEH1-AS1; ; LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 7.93% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.37037037
seqAAMRIYSKGCGQMNECTFFSGQKDVRIHELE
orfFrame7.180798429

In stringent set: no

Locus conservation

Locus conservation?
RNASEH1-AS1:15 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 RNASEH1-AS1:15
4.1 RNASEH1-AS1:15
5.0 RNASEH1-AS1:15
5.1 RNASEH1-AS1:15
5.2 RNASEH1-AS1:15