Transcript: RNASEH1-AS1:17

Basic information

LNCipedia transcript ID: RNASEH1-AS1:17 
HGNC Gene Symbol: RNASEH1-AS1    
HGNC Full Gene Name: RNASEH1 antisense RNA 1
Ensembl Gene ID: ENSG00000234171
Ensembl Transcript ID: ENST00000426725
Location (hg19): chr2:3606168-3609321
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 836 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426725; TCONS_00002800; ENST00000426725.1; AC108488.3-002; OTTHUMT00000322558.1
Alternative gene names: ENSG00000234171; XLOC_001323; linc-RPS7-1; AC108488.3; ENSG00000234171.1; OTTHUMG00000151419.1; RNASEH1-AS1; ENSG00000234171.2; ; LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 8.08% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.180798429
seqAAMRIYSKGCGQMNECTFFSGQKDVRIHELE
covF1Prop0.37037037

In stringent set: no

Locus conservation

Locus conservation?
RNASEH1-AS1:17 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS7-1:10
3.1 lnc-RPS7-1:10
4.0 RNASEH1-AS1:17
4.1 RNASEH1-AS1:17
5.0 RNASEH1-AS1:17
5.1 RNASEH1-AS1:17
5.2 RNASEH1-AS1:17