Transcript: RNASEH1-AS1:2

Basic information

LNCipedia transcript ID: RNASEH1-AS1:2 
LNCipedia gene ID: RNASEH1-AS1
RefSeq ID: NR_038430
Location (hg19): chr2:3605977-3609340
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1372 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT068732; NR_038430; NR_038430.1
Alternative gene names: ; LOC100506054; RNASEH1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 7.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH1-AS1:2 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS7-1:12
4.0 RNASEH1-AS1:2
4.1 RNASEH1-AS1:2
5.0 RNASEH1-AS1:2
5.1 RNASEH1-AS1:2
5.2 RNASEH1-AS1:2