Transcript: RNASEH1-AS1:8

Basic information

LNCipedia transcript ID: RNASEH1-AS1:8 
LNCipedia gene ID: RNASEH1-AS1
Location (hg19): chr2:3606044-3609313
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1131 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004675; NONHSAT068737
Alternative gene names: XLOC_001323; linc-RPS7-1; ; LOC100506054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6439 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.37037037
orfFrame7.180798429
seqAAMRIYSKGCGQMNECTFFSGQKDVRIHELE

In stringent set: no

Locus conservation

Locus conservation?
RNASEH1-AS1:8 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS7-1:5
3.1 lnc-RPS7-1:5
4.0 RNASEH1-AS1:8
4.1 RNASEH1-AS1:8
5.0 RNASEH1-AS1:8
5.1 RNASEH1-AS1:8
5.2 RNASEH1-AS1:8