Transcript: RNASEH2B-AS1:4

Basic information

LNCipedia transcript ID: RNASEH2B-AS1:4 
HGNC Gene Symbol: RNASEH2B-AS1    
HGNC Full Gene Name: RNASEH2B antisense RNA 1
Ensembl Gene ID: ENSG00000233672
Ensembl Transcript ID: ENST00000596992
Location (hg19): chr13:51450822-51484730
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 794 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033869; ENST00000596992.1; ENST00000596992.5
Alternative gene names: ENSG00000233672.2; RNASEH2B-AS1; ENSG00000233672.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0857 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH2B-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLEU7-1:5
4.0 RNASEH2B-AS1:4
4.1 RNASEH2B-AS1:4
5.0 RNASEH2B-AS1:4
5.1 RNASEH2B-AS1:4
5.2 RNASEH2B-AS1:4