Transcript: RNF139-AS1:4

Basic information

LNCipedia transcript ID: RNF139-AS1:4 
HGNC Gene Symbol: RNF139-AS1    
HGNC Full Gene Name: RNF139 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000245149
Ensembl Transcript ID: ENST00000499418
Location (hg19): chr8:125474726-125486805
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 5654 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499418; ENST00000499418.2; RP11-383J24.5-001; OTTHUMT00000381699.1; NONHSAT128585
Alternative gene names: ENSG00000245149; RP11-383J24.5; ENSG00000245149.3; OTTHUMG00000165073.2; RNF139-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7201 non-coding 
CPAT coding probability 20.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNF139-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TATDN1-1:2
3.1 lnc-TATDN1-1:2
4.0 RNF139-AS1:4
4.1 RNF139-AS1:4
5.0 RNF139-AS1:4
5.1 RNF139-AS1:4
5.2 RNF139-AS1:4