Transcript: RNF216-IT1:1

Basic information

LNCipedia transcript ID: RNF216-IT1:1 
HGNC Gene Symbol: RNF216-IT1    
HGNC Full Gene Name: RNF216 intronic transcript 1
Ensembl Gene ID: ENSG00000237738
Ensembl Transcript ID: ENST00000443837
RefSeq ID: NR_046834
Location (hg19): chr7:5702063-5720092
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 337 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000443837.1; RNF216-IT1-001; OTTHUMT00000340371.1; NONHSAT118932; NR_046834; NR_046834.1
Alternative gene names: ENSG00000237738.1; RNF216-IT1; OTTHUMG00000155498.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.9664 non-coding 
CPAT coding probability 21.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNF216-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACTB-1:1
4.0 RNF216-IT1:1
4.1 RNF216-IT1:1
5.0 RNF216-IT1:1
5.1 RNF216-IT1:1
5.2 RNF216-IT1:1