Transcript: ROR1-AS1:1

Basic information

LNCipedia transcript ID: ROR1-AS1:1 
HGNC Gene Symbol: ROR1-AS1    
HGNC Full Gene Name: ROR1 antisense RNA 1
Ensembl Gene ID: ENSG00000223949
Ensembl Transcript ID: ENST00000424995
Location (hg19): chr1:64571005-64636980
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2189 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424995.1; RP11-24J23.2-001; OTTHUMT00000025008.1; NONHSAT003703
Alternative gene names: ENSG00000223949.1; RP11-24J23.2; OTTHUMG00000009024.1; ENSG00000223949.2; ENSG00000223949.6; ROR1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.7661 non-coding 
CPAT coding probability 83.38% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ROR1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGB3BP-4:1
4.0 ROR1-AS1:1
4.1 ROR1-AS1:1
5.0 ROR1-AS1:1
5.1 ROR1-AS1:1
5.2 ROR1-AS1:1