Transcript: RORB-AS1:1

Basic information

LNCipedia transcript ID: RORB-AS1:1 
LNCipedia gene ID: RORB-AS1
Location (hg19): chr9:77100467-77114043
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1177 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000417576.1; RP11-171A24.3-001; OTTHUMT00000052691.1; NONHSAT131921
Alternative gene names: ENSG00000224825.1; RP11-171A24.3; OTTHUMG00000020025.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.898 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RORB-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPM6-1:1
4.0 RORB-AS1:1
4.1 RORB-AS1:1
5.0 RORB-AS1:1
5.1 RORB-AS1:1
5.2 RORB-AS1:1