Transcript: RORB-AS1:2

Basic information

LNCipedia transcript ID: RORB-AS1:2 
HGNC Gene Symbol: RORB-AS1    
HGNC Full Gene Name: RORB antisense RNA 1
Ensembl Gene ID: ENSG00000224825
Ensembl Transcript ID: ENST00000417576
Location (hg19): chr9:77100467-77114043
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1178 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT131920; ENST00000417576.2
Alternative gene names: ENSG00000224825.2; RP11-171A24.3; RORB-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.898 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RORB-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPM6-1:2
4.0 RORB-AS1:2
4.1 RORB-AS1:2
5.0 RORB-AS1:2
5.1 RORB-AS1:2
5.2 RORB-AS1:2