Transcript: RORB-AS1:3

Basic information

LNCipedia transcript ID: RORB-AS1:3 
LNCipedia gene ID: RORB-AS1
RefSeq ID: NR_125791
Location (hg19): chr9:77088351-77113469
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 824 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125791; NR_125791.1
Alternative gene names: ; RORB-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.1054 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RORB-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPM6-2:3
4.0 RORB-AS1:3
4.1 RORB-AS1:3
5.0 RORB-AS1:3
5.1 RORB-AS1:3
5.2 RORB-AS1:3