Transcript: RPS6KA2-AS1:2

Basic information

LNCipedia transcript ID: RPS6KA2-AS1:2 
LNCipedia gene ID: RPS6KA2-AS1
Location (hg19): chr6:167313424-167318579
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4286 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT116057
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.5519 non-coding 
CPAT coding probability 20.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RPS6KA2-AS1:2 no no no no

Available literature

  1. Monti (2009), In silico prediction and experimental validation of natural antisense transcripts in two cancer-associated regions of human chromosome 6., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR1OP-1:3
4.0 RPS6KA2-AS1:2
4.1 RPS6KA2-AS1:2
5.0 RPS6KA2-AS1:2
5.1 RPS6KA2-AS1:2
5.2 RPS6KA2-AS1:2