Transcript: RPS6KA2-AS1:4

Basic information

LNCipedia transcript ID: RPS6KA2-AS1:4 
HGNC Gene Symbol: RPS6KA2-AS1    
HGNC Full Gene Name: RPS6KA2 antisense RNA 1
Ensembl Gene ID: ENSG00000231654
Ensembl Transcript ID: ENST00000455390
Location (hg19): chr6:167317186-167318323
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 627 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011414; ENST00000455390.1; RPS6KA2-AS1-001; OTTHUMT00000043074.1; NONHSAT116061
Alternative gene names: XLOC_005539; linc-FGFR1OP-1; ENSG00000231654.1; RPS6KA2-AS1; OTTHUMG00000016006.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.1509 non-coding 
CPAT coding probability 8.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RPS6KA2-AS1:4 no no no no

Available literature

  1. Monti (2009), In silico prediction and experimental validation of natural antisense transcripts in two cancer-associated regions of human chromosome 6., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFR1OP-1:2
3.1 lnc-FGFR1OP-1:2
4.0 RPS6KA2-AS1:4
4.1 RPS6KA2-AS1:4
5.0 RPS6KA2-AS1:4
5.1 RPS6KA2-AS1:4
5.2 RPS6KA2-AS1:4