Transcript: RPS6KA2-AS1:5

Basic information

LNCipedia transcript ID: RPS6KA2-AS1:5 
LNCipedia gene ID: RPS6KA2-AS1
RefSeq ID: NR_046644
Location (hg19): chr6:167317186-167318557
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 861 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046644; NR_046644.1
Alternative gene names: ; RPS6KA2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.2894 non-coding 
CPAT coding probability 8.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RPS6KA2-AS1:5 no no no no

Available literature

  1. Monti (2009), In silico prediction and experimental validation of natural antisense transcripts in two cancer-associated regions of human chromosome 6., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR1OP-1:5
4.0 RPS6KA2-AS1:5
4.1 RPS6KA2-AS1:5
5.0 RPS6KA2-AS1:5
5.1 RPS6KA2-AS1:5
5.2 RPS6KA2-AS1:5