Transcript: RUSC1-AS1:4

Basic information

LNCipedia transcript ID: RUSC1-AS1:4 
HGNC Gene Symbol: RUSC1-AS1    
HGNC Full Gene Name: RUSC1 antisense RNA 1
Ensembl Gene ID: ENSG00000225855
Ensembl Transcript ID: ENST00000446880
Location (hg19): chr1:155286654-155291335
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1836 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446880.1; RUSC1-AS1-001; OTTHUMT00000039073.2; NONHSAT006726; ENST00000446880.5
Alternative gene names: ENSG00000225855.2; RUSC1-AS1; OTTHUMG00000013912.2; ENSG00000225855.6; FLJ35976


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.5297 non-coding 
CPAT coding probability 69.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RUSC1-AS1:4 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASH1L-1:3
4.0 RUSC1-AS1:4
4.1 RUSC1-AS1:4
5.0 RUSC1-AS1:4
5.1 RUSC1-AS1:4
5.2 RUSC1-AS1:4