Transcript: RUSC1-AS1:9

Basic information

LNCipedia transcript ID: RUSC1-AS1:9 
LNCipedia gene ID: RUSC1-AS1
Location (hg19): chr1:155287737-155293962
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 682 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225855.2|ENST00000443642.1
Alternative gene names: FLJ35976


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.5297 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RUSC1-AS1:9 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RUSC1-AS1:9
5.0 RUSC1-AS1:9
5.1 RUSC1-AS1:9
5.2 RUSC1-AS1:9