Transcript: SACS-AS1:1

Basic information

LNCipedia transcript ID: SACS-AS1:1 
LNCipedia gene ID: SACS-AS1
Location (hg19): chr13:23993110-24002818
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2044 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443092; ENST00000443092.1; SACS-AS1-001; OTTHUMT00000044153.1
Alternative gene names: ENSG00000229558; SACS-AS1; ENSG00000229558.1; OTTHUMG00000016565.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 102.9595 coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SACS-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGCG-4:1
3.1 lnc-SGCG-4:1
4.0 SACS-AS1:1
4.1 SACS-AS1:1
5.0 SACS-AS1:1
5.1 SACS-AS1:1
5.2 SACS-AS1:1