Transcript: SACS-AS1:2

Basic information

LNCipedia transcript ID: SACS-AS1:2 
HGNC Gene Symbol: SACS-AS1    
HGNC Full Gene Name: SACS antisense RNA 1
Ensembl Gene ID: ENSG00000229558
Ensembl Transcript ID: ENST00000443092
RefSeq ID: NR_103450
Location (hg19): chr13:23993110-24003008
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2234 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT032461; NR_103450; ENST00000443092.2; NR_103450.1
Alternative gene names: ENSG00000229558.2; SACS-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 102.9595 coding 
CPAT coding probability 9.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SACS-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGCG-4:2
4.0 SACS-AS1:2
4.1 SACS-AS1:2
5.0 SACS-AS1:2
5.1 SACS-AS1:2
5.2 SACS-AS1:2