Transcript: SAMD12-AS1:8

Basic information

LNCipedia transcript ID: SAMD12-AS1:8 
HGNC Gene Symbol: SAMD12-AS1    
HGNC Full Gene Name: SAMD12 antisense RNA 1
Ensembl Gene ID: ENSG00000281641
Ensembl Transcript ID: ENST00000629661
Location (hg19): chr8:119633794-119870457
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 657 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629661.1
Alternative gene names: ENSG00000281641.2; SAMD12-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -119.7572 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMD12-AS1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-COLEC10-4:3
4.1 lnc-COLEC10-4:3
5.0 lnc-COLEC10-4:3
5.1 SAMD12-AS1:4
5.2 SAMD12-AS1:8