Transcript: SAP30L-AS1:1

Basic information

LNCipedia transcript ID: SAP30L-AS1:1 
LNCipedia gene ID: SAP30L-AS1
Location (hg19): chr5:153815561-153825410
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 567 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000501280; ENST00000501280.2; CTB-157D17.1-004; OTTHUMT00000374281.1; NONHSAT104696
Alternative gene names: ENSG00000245275; CTB-157D17.1; ENSG00000245275.2; OTTHUMG00000163570.1; FLJ38109; GALNT10-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.5909 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAP30L-AS1:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAND1-2:1
3.1 lnc-HAND1-2:1
4.0 SAP30L-AS1:1
4.1 SAP30L-AS1:1
5.0 SAP30L-AS1:1
5.1 SAP30L-AS1:1
5.2 SAP30L-AS1:1