Transcript: SAP30L-AS1:4

Basic information

LNCipedia transcript ID: SAP30L-AS1:4 
LNCipedia gene ID: SAP30L-AS1
RefSeq ID: NR_037897
Location (hg19): chr5:153769329-153825382
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3450 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT104692; NR_037897; NR_037897.1
Alternative gene names: FLJ38109; GALNT10-AS1; SAP30L-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.5909 non-coding 
CPAT coding probability 3.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAP30L-AS1:4 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HAND1-2:6
4.0 SAP30L-AS1:4
4.1 SAP30L-AS1:4
5.0 SAP30L-AS1:4
5.1 SAP30L-AS1:4
5.2 SAP30L-AS1:4