Transcript: SAP30L-AS1:7

Basic information

LNCipedia transcript ID: SAP30L-AS1:7 
LNCipedia gene ID: SAP30L-AS1
Location (hg19): chr5:153815561-153823040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1763 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT104695
Alternative gene names: FLJ38109; GALNT10-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.5909 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAP30L-AS1:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HAND1-2:7
4.0 SAP30L-AS1:7
4.1 SAP30L-AS1:7
5.0 SAP30L-AS1:7
5.1 SAP30L-AS1:7
5.2 SAP30L-AS1:7