Transcript: SCAANT1:3

Basic information

LNCipedia transcript ID: SCAANT1:3 
HGNC Gene Symbol: SCAANT1    
HGNC Full Gene Name: SCA7/ATXN7 antisense RNA 1
Ensembl Gene ID: ENSG00000280620
Ensembl Transcript ID: ENST00000626439
Location (hg19): chr3:63897194-63897448
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 255 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626439.1
Alternative gene names: ENSG00000280620.1; SCAANT1; AC012557.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -123.1071 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCAANT1:3 no no no no

Available literature

  1. Sopher (2011), CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA., Neuron


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-THOC7-3:1
4.1 lnc-THOC7-3:1
5.0 lnc-THOC7-3:1
5.1 SCAANT1:2
5.2 SCAANT1:3