Transcript: SCEL-AS1:1

Basic information

LNCipedia transcript ID: SCEL-AS1:1 
LNCipedia gene ID: SCEL-AS1
Location (hg19): chr13:78173890-78180686
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 450 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457528.1; SCEL-AS1-002; OTTHUMT00000045337.1; NONHSAT034416
Alternative gene names: ENSG00000224347.1; SCEL-AS1; OTTHUMG00000017106.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -319.4541 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCEL-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYCBP2-1:1
4.0 SCEL-AS1:1
4.1 SCEL-AS1:1
5.0 SCEL-AS1:1
5.1 SCEL-AS1:1
5.2 SCEL-AS1:1