Transcript: SCEL-AS1:3

Basic information

LNCipedia transcript ID: SCEL-AS1:3 
LNCipedia gene ID: SCEL-AS1
Location (hg19): chr13:78173891-78180686
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 569 bp
Exons: 4
Sources: Refseq - Dec 2014
Alternative transcript names: NR_126412
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -284.5932 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCEL-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYCBP2-1:5
4.0 SCEL-AS1:3
4.1 SCEL-AS1:3
5.0 SCEL-AS1:3
5.1 SCEL-AS1:3
5.2 SCEL-AS1:3