Transcript: SCHLAP1:2

Basic information

LNCipedia transcript ID: SCHLAP1:2 
LNCipedia gene ID: SCHLAP1
RefSeq ID: NR_104324
Location (hg19): chr2:181556831-181781666
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1468 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104324; NR_104324.1
Alternative gene names: SChLAP1; PCAT11; SCHLAP1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.9349 non-coding 
CPAT coding probability 8.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCHLAP1:2 no no no no

Available literature

  1. Lee (2013), Linking the SWI/SNF complex to prostate cancer., Nat. Genet.
  2. Prensner (2013), The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2E3-2:2
4.0 SCHLAP1:2
4.1 SCHLAP1:2
5.0 SCHLAP1:2
5.1 SCHLAP1:2
5.2 SCHLAP1:2