Transcript: SCHLAP1:4

Basic information

LNCipedia transcript ID: SCHLAP1:4 
HGNC Gene Symbol: SCHLAP1    
HGNC Full Gene Name: SWI/SNF complex antagonist associated with prostate cancer 1
Ensembl Gene ID: ENSG00000281131
Ensembl Transcript ID: ENST00000629145
RefSeq ID: NR_104319
Location (hg19): chr2:181556831-181781666
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1436 bp
Exons: 5
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104319; ENST00000629145.1; NR_104319.1
Alternative gene names: ENSG00000281131.1; SCHLAP1; SChLAP1; PCAT11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.9349 non-coding 
CPAT coding probability 12.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCHLAP1:4 no no no no

Available literature

  1. Lee (2013), Linking the SWI/SNF complex to prostate cancer., Nat. Genet.
  2. Prensner (2013), The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2E3-2:4
4.0 SCHLAP1:4
4.1 SCHLAP1:4
5.0 SCHLAP1:4
5.1 SCHLAP1:4
5.2 SCHLAP1:4