Transcript: SCOC-AS1:1

Basic information

LNCipedia transcript ID: SCOC-AS1:1 
LNCipedia gene ID: SCOC-AS1
RefSeq ID: NR_033939
Location (hg19): chr4:141204880-141294546
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2017 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT098491; NR_033939; NR_033939.1
Alternative gene names: ; SCOC-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.5377 non-coding 
CPAT coding probability 58.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SCOC-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLGN-1:2
4.0 SCOC-AS1:1
4.1 SCOC-AS1:1
5.0 SCOC-AS1:1
5.1 SCOC-AS1:1
5.2 SCOC-AS1:1