Transcript: SCOC-AS1:3

Basic information

LNCipedia transcript ID: SCOC-AS1:3 
LNCipedia gene ID: SCOC-AS1
Location (hg19): chr4:141204880-141294514
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1985 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000512692; ENST00000512692.1; RP11-425I13.3-001; OTTHUMT00000364723.1
Alternative gene names: ENSG00000196951; RP11-425I13.3; ENSG00000196951.5; OTTHUMG00000161377.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.5377 non-coding 
CPAT coding probability 58.52% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SCOC-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLGN-1:1
3.1 lnc-CLGN-1:1
4.0 SCOC-AS1:3
4.1 SCOC-AS1:3
5.0 SCOC-AS1:3
5.1 SCOC-AS1:3
5.2 SCOC-AS1:3