Transcript: SCOC-AS1:9

Basic information

LNCipedia transcript ID: SCOC-AS1:9 
LNCipedia gene ID: SCOC-AS1
Location (hg19): chr4:141279850-141294557
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8158 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000196951.6|ENCT00000336859.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.159 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCOC-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SCOC-AS1:9
5.0 SCOC-AS1:9
5.1 SCOC-AS1:9
5.2 SCOC-AS1:9