Transcript: SEC24B-AS1:5

Basic information

LNCipedia transcript ID: SEC24B-AS1:5 
HGNC Gene Symbol: SEC24B-AS1    
HGNC Full Gene Name: SEC24B antisense RNA 1
Ensembl Gene ID: ENSG00000247950
Ensembl Transcript ID: ENST00000499713
Location (hg19): chr4:110268631-110335566
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1433 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499713; ENST00000499713.2; SEC24B-AS1-001; OTTHUMT00000363574.2; NONHSAT097776; ENST00000499713.6
Alternative gene names: ENSG00000247950; RP11-264J9.1; ENSG00000247950.2; SEC24B-AS1; OTTHUMG00000161048.2; ENSG00000247950.6; 1/2-SBSRNA4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.7987 non-coding 
CPAT coding probability 15.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEC24B-AS1:5 no no no no

Available literature

  1. Gong (2011), lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL25A1-1:4
3.1 lnc-COL25A1-1:4
4.0 SEC24B-AS1:5
4.1 SEC24B-AS1:5
5.0 SEC24B-AS1:5
5.1 SEC24B-AS1:5
5.2 SEC24B-AS1:5