Transcript: SEMA5A-AS1:3

Basic information

LNCipedia transcript ID: SEMA5A-AS1:3 
HGNC Gene Symbol: SEMA5A-AS1    
HGNC Full Gene Name: SEMA5A antisense RNA 1
Ensembl Gene ID: ENSG00000251370
Ensembl Transcript ID: ENST00000510879
RefSeq ID: NR_109935
Location (hg19): chr5:9511445-9518198
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1679 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000510879; ENST00000510879.1; CTD-2201E9.1-001; OTTHUMT00000365860.1; NONHSAT100365; NR_109935; NR_109935.1
Alternative gene names: ENSG00000251370; CTD-2201E9.1; ENSG00000251370.1; OTTHUMG00000161718.1; SEMA5A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.8622 non-coding 
CPAT coding probability 9.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEMA5A-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCT5-4:1
3.1 lnc-CCT5-5:1
4.0 lnc-CCT5-5:1
4.1 lnc-CCT5-5:1
5.0 lnc-CCT5-5:1
5.1 SEMA5A-AS1:2
5.2 SEMA5A-AS1:3