Transcript: SGMS1-AS1:16

Basic information

LNCipedia transcript ID: SGMS1-AS1:16 
LNCipedia gene ID: SGMS1-AS1
Location (hg19): chr10:52383844-52401263
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 14120 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226200.2|ENCT00000045932.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.954 non-coding 
CPAT coding probability 32.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGMS1-AS1:16 no no no no

Available literature

  1. Lin (2014), Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs., Transl Neurodegener


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SGMS1-AS1:16
5.0 SGMS1-AS1:16
5.1 SGMS1-AS1:16
5.2 SGMS1-AS1:16