Transcript: SGO1-AS1:16

Basic information

LNCipedia transcript ID: SGO1-AS1:16 
LNCipedia gene ID: SGO1-AS1
Location (hg19): chr3:20228033-20229918
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1886 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237485.1|ENCT00000286302.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.3159 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGO1-AS1:16 no no no no

Available literature

  1. Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SGO1-AS1:16
5.0 SGO1-AS1:16
5.1 SGO1-AS1:16
5.2 SGO1-AS1:16