Transcript: SGO1-AS1:7

Basic information

LNCipedia transcript ID: SGO1-AS1:7 
LNCipedia gene ID: SGO1-AS1
Location (hg19): chr3:20387156-20389501
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 417 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT088622; FPKM1_group_20919_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.5579 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGO1-AS1:7 no no no no

Available literature

  1. Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KAT2B-2:3
4.0 SGO1-AS1:7
4.1 SGO1-AS1:7
5.0 SGO1-AS1:7
5.1 SGO1-AS1:7
5.2 SGO1-AS1:7