Transcript: SH3TC2-DT:29

Basic information

LNCipedia transcript ID: SH3TC2-DT:29 
LNCipedia gene ID: SH3TC2-DT
Location (hg19): chr5:148442800-148458139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7967 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250072.1|MICT00000291133.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5081 non-coding 
CPAT coding probability 99.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SH3TC2-DT:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABLIM3-1:10
5.0 lnc-ABLIM3-1:10
5.1 SH3TC2-DT:4
5.2 SH3TC2-DT:29