Transcript: SH3TC2-DT:50

Basic information

LNCipedia transcript ID: SH3TC2-DT:50 
HGNC Gene Symbol: SH3TC2-DT    
HGNC Full Gene Name: SH3TC2 divergent transcript
Ensembl Gene ID: ENSG00000250072
Ensembl Transcript ID: ENST00000507373
Location (hg19): chr5:148443172-148486701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507373; ENST00000507373.1; CTC-529P8.1-003; OTTHUMT00000373407.1; NONHSAT104476
Alternative gene names: ENSG00000250072; CTC-529P8.1; ENSG00000250072.1; OTTHUMG00000163433.1; ENSG00000250072.5; AC091940.1; SH3TC2-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.844 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SH3TC2-DT:50 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABLIM3-1:5
3.1 lnc-ABLIM3-1:5
4.0 lnc-ABLIM3-1:5
4.1 lnc-ABLIM3-1:5
5.0 lnc-ABLIM3-1:5
5.1 SH3TC2-DT:25
5.2 SH3TC2-DT:50