Transcript: SIRLNT:10

Basic information

LNCipedia transcript ID: SIRLNT:10 
LNCipedia gene ID: SIRLNT
Location (hg19): chr8:40190731-40210632
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014985; NONHSAT126204
Alternative gene names: XLOC_007065; linc-ADAM2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8914 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIRLNT:10 no no no no

Available literature

  1. Liang (2018), A novel long non-coding RNA-PRLB acts as a tumor promoter through regulating miR-4766-5p/SIRT1 axis in breast cancer., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMAT4-3:2
3.1 lnc-ZMAT4-3:2
4.0 lnc-ZMAT4-3:2
4.1 lnc-ZMAT4-3:2
5.0 lnc-ZMAT4-3:2
5.1 SIRLNT:3
5.2 SIRLNT:10