Transcript: SIRPG-AS1:2

Basic information

LNCipedia transcript ID: SIRPG-AS1:2 
LNCipedia gene ID: SIRPG-AS1
RefSeq ID: NR_110090
Location (hg19): chr20:1614154-1629119
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2796 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110090; NR_110090.1
Alternative gene names: ; SIRPG-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.876 non-coding 
CPAT coding probability 6.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIRPG-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIRPA-3:3
4.0 SIRPG-AS1:2
4.1 SIRPG-AS1:2
5.0 SIRPG-AS1:2
5.1 SIRPG-AS1:2
5.2 SIRPG-AS1:2