Transcript: SIRPG-AS1:3

Basic information

LNCipedia transcript ID: SIRPG-AS1:3 
HGNC Gene Symbol: SIRPG-AS1    
HGNC Full Gene Name: SIRPG antisense RNA 1
Ensembl Gene ID: ENSG00000237914
Ensembl Transcript ID: ENST00000437384
Location (hg19): chr20:1614272-1619100
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 410 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437384; ENST00000437384.1; RP11-77C3.3-001; OTTHUMT00000077554.2; NONHSAT078125
Alternative gene names: ENSG00000237914; RP11-77C3.3; ENSG00000237914.1; OTTHUMG00000031675.2; ENSG00000237914.5; SIRPG-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.1195 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIRPG-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIRPA-3:2
3.1 lnc-SIRPA-3:2
4.0 SIRPG-AS1:3
4.1 SIRPG-AS1:3
5.0 SIRPG-AS1:3
5.1 SIRPG-AS1:3
5.2 SIRPG-AS1:3