Transcript: SIX3-AS1:9

Basic information

LNCipedia transcript ID: SIX3-AS1:9 
LNCipedia gene ID: SIX3-AS1
Location (hg19): chr2:45167293-45169048
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 880 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236502.1|ENST00000419364.1
Alternative gene names: SIX3OS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.483 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIX3-AS1:9 yes no no no

Available literature

  1. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SIX3-AS1:9
5.0 SIX3-AS1:9
5.1 SIX3-AS1:9
5.2 SIX3-AS1:9