Transcript: SLC12A9-AS1:12

Basic information

LNCipedia transcript ID: SLC12A9-AS1:12 
HGNC Gene Symbol: SLC12A9-AS1    
HGNC Full Gene Name: SLC12A9 antisense RNA 1
Ensembl Gene ID: ENSG00000236305
Ensembl Transcript ID: ENST00000412754
Location (hg19): chr7:100434936-100450238
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 369 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013214; ENST00000412754.1; RP11-126L15.4-001; OTTHUMT00000347232.1; NONHSAT122410
Alternative gene names: XLOC_006544; linc-EPHB4; ENSG00000236305.1; RP11-126L15.4; OTTHUMG00000157041.1; SLC12A9-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.5926 non-coding 
CPAT coding probability 28.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC12A9-AS1:12 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EPHB4-1:1
3.1 lnc-EPHB4-1:1
4.0 lnc-EPHB4-1:1
4.1 lnc-EPHB4-1:1
5.0 lnc-EPHB4-1:1
5.1 SLC12A9-AS1:6
5.2 SLC12A9-AS1:12