Transcript: SLC12A9-AS1:13

Basic information

LNCipedia transcript ID: SLC12A9-AS1:13 
LNCipedia gene ID: SLC12A9-AS1
Location (hg19): chr7:100434865-100450237
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 439 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1290:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -176.3568 non-coding 
CPAT coding probability 28.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC12A9-AS1:13 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EPHB4-1:2
4.1 lnc-EPHB4-1:2
5.0 lnc-EPHB4-1:2
5.1 SLC12A9-AS1:7
5.2 SLC12A9-AS1:13