Transcript: SLC12A9-AS1:8

Basic information

LNCipedia transcript ID: SLC12A9-AS1:8 
LNCipedia gene ID: SLC12A9-AS1
Location (hg19): chr7:100426935-100450259
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1365 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236305.1|FTMT22500009430.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -33.6371 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC12A9-AS1:8 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EPHB4-1:3
5.0 lnc-EPHB4-1:3
5.1 SLC12A9-AS1:2
5.2 SLC12A9-AS1:8