Transcript: SLC25A25-AS1:16

Basic information

LNCipedia transcript ID: SLC25A25-AS1:16 
LNCipedia gene ID: SLC25A25-AS1
Location (hg19): chr9:130870860-130871604
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 745 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT134892; ENST00000602939.1
Alternative gene names: ENSG00000269988.1; RP11-395P17.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.4945 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC25A25-AS1:16 yes no no no

Available literature

  1. Li (2016), Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells., Tumour Biol.
  2. Xu (2014), [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]., Zhonghua Wei Chang Wai Ke Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGES2-1:15
4.0 SLC25A25-AS1:16
4.1 SLC25A25-AS1:16
5.0 SLC25A25-AS1:16
5.1 SLC25A25-AS1:16
5.2 SLC25A25-AS1:16