Transcript: SLC25A25-AS1:5

Basic information

LNCipedia transcript ID: SLC25A25-AS1:5 
LNCipedia gene ID: SLC25A25-AS1
Location (hg19): chr9:130875641-130881013
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2479 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536815.1; RP11-395P17.3-201
Alternative gene names: ENSG00000234771.2; RP11-395P17.3; OTTHUMG00000020737.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.1789 non-coding 
CPAT coding probability 45.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC25A25-AS1:5 no no no no

Available literature

  1. Li (2016), Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells., Tumour Biol.
  2. Xu (2014), [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]., Zhonghua Wei Chang Wai Ke Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGES2-1:1
4.0 SLC25A25-AS1:5
4.1 SLC25A25-AS1:5
5.0 SLC25A25-AS1:5
5.1 SLC25A25-AS1:5
5.2 SLC25A25-AS1:5