Transcript: SLC25A25-AS1:6

Basic information

LNCipedia transcript ID: SLC25A25-AS1:6 
LNCipedia gene ID: SLC25A25-AS1
RefSeq ID: NR_033374
Location (hg19): chr9:130873450-130881013
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3842 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT134894; NR_033374; NR_033374.1
Alternative gene names: ; SLC25A25-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.8148 non-coding 
CPAT coding probability 43.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC25A25-AS1:6 no no no no

Available literature

  1. Li (2016), Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells., Tumour Biol.
  2. Xu (2014), [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]., Zhonghua Wei Chang Wai Ke Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGES2-1:11
4.0 SLC25A25-AS1:6
4.1 SLC25A25-AS1:6
5.0 SLC25A25-AS1:6
5.1 SLC25A25-AS1:6
5.2 SLC25A25-AS1:6