Transcript: SLC25A25-AS1:7

Basic information

LNCipedia transcript ID: SLC25A25-AS1:7 
LNCipedia gene ID: SLC25A25-AS1
Location (hg19): chr9:130873450-130880972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3801 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00015886; ENST00000418747.1; RP11-395P17.3-001; OTTHUMT00000054410.1
Alternative gene names: XLOC_007858; linc-NAIF1; ENSG00000234771.2; RP11-395P17.3; OTTHUMG00000020737.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.8148 non-coding 
CPAT coding probability 43.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC25A25-AS1:7 no no no no

Available literature

  1. Li (2016), Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells., Tumour Biol.
  2. Xu (2014), [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]., Zhonghua Wei Chang Wai Ke Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGES2-1:1
3.1 lnc-PTGES2-1:2
4.0 SLC25A25-AS1:7
4.1 SLC25A25-AS1:7
5.0 SLC25A25-AS1:7
5.1 SLC25A25-AS1:7
5.2 SLC25A25-AS1:7